Detalhe da pesquisa
1.
Implicit model to capture electrostatic features of membrane environment.
PLoS Comput Biol
; 20(1): e1011296, 2024 Jan.
Artigo
Inglês
| MEDLINE | ID: mdl-38252688
2.
Accurate positioning of functional residues with robotics-inspired computational protein design.
Proc Natl Acad Sci U S A
; 119(11): e2115480119, 2022 03 15.
Artigo
Inglês
| MEDLINE | ID: mdl-35254891
3.
Shotgun scanning glycomutagenesis: A simple and efficient strategy for constructing and characterizing neoglycoproteins.
Proc Natl Acad Sci U S A
; 118(39)2021 09 28.
Artigo
Inglês
| MEDLINE | ID: mdl-34551980
4.
De novo design and Rosetta-based assessment of high-affinity antibody variable regions (Fv) against the SARS-CoV-2 spike receptor binding domain (RBD).
Proteins
; 91(2): 196-208, 2023 02.
Artigo
Inglês
| MEDLINE | ID: mdl-36111441
5.
Impact of AlphaFold on structure prediction of protein complexes: The CASP15-CAPRI experiment.
Proteins
; 91(12): 1658-1683, 2023 Dec.
Artigo
Inglês
| MEDLINE | ID: mdl-37905971
6.
Macromolecular modeling and design in Rosetta: recent methods and frameworks.
Nat Methods
; 17(7): 665-680, 2020 07.
Artigo
Inglês
| MEDLINE | ID: mdl-32483333
7.
Induced fit with replica exchange improves protein complex structure prediction.
PLoS Comput Biol
; 18(6): e1010124, 2022 06.
Artigo
Inglês
| MEDLINE | ID: mdl-35658008
8.
The structure of the colorectal cancer-associated enzyme GalNAc-T12 reveals how nonconserved residues dictate its function.
Proc Natl Acad Sci U S A
; 116(41): 20404-20410, 2019 10 08.
Artigo
Inglês
| MEDLINE | ID: mdl-31548401
9.
Caulobacter crescentus Hfq structure reveals a conserved mechanism of RNA annealing regulation.
Proc Natl Acad Sci U S A
; 116(22): 10978-10987, 2019 05 28.
Artigo
Inglês
| MEDLINE | ID: mdl-31076551
10.
Protein docking and steered molecular dynamics suggest alternative phospholamban-binding sites on the SERCA calcium transporter.
J Biol Chem
; 295(32): 11262-11274, 2020 08 07.
Artigo
Inglês
| MEDLINE | ID: mdl-32554805
11.
Prediction of protein assemblies, the next frontier: The CASP14-CAPRI experiment.
Proteins
; 89(12): 1800-1823, 2021 12.
Artigo
Inglês
| MEDLINE | ID: mdl-34453465
12.
Geometric potentials from deep learning improve prediction of CDR H3 loop structures.
Bioinformatics
; 36(Suppl_1): i268-i275, 2020 07 01.
Artigo
Inglês
| MEDLINE | ID: mdl-32657412
13.
Better together: Elements of successful scientific software development in a distributed collaborative community.
PLoS Comput Biol
; 16(5): e1007507, 2020 05.
Artigo
Inglês
| MEDLINE | ID: mdl-32365137
14.
Protein Structure Prediction and Design in a Biologically Realistic Implicit Membrane.
Biophys J
; 118(8): 2042-2055, 2020 04 21.
Artigo
Inglês
| MEDLINE | ID: mdl-32224301
15.
Novel sampling strategies and a coarse-grained score function for docking homomers, flexible heteromers, and oligosaccharides using Rosetta in CAPRI rounds 37-45.
Proteins
; 88(8): 973-985, 2020 08.
Artigo
Inglês
| MEDLINE | ID: mdl-31742764
16.
Plasma Cells Are the Most Abundant Gluten Peptide MHC-expressing Cells in Inflamed Intestinal Tissues From Patients With Celiac Disease.
Gastroenterology
; 156(5): 1428-1439.e10, 2019 Apr.
Artigo
Inglês
| MEDLINE | ID: mdl-30593798
17.
A humanized yeast system to analyze cleavage of prelamin A by ZMPSTE24.
Methods
; 157: 47-55, 2019 03 15.
Artigo
Inglês
| MEDLINE | ID: mdl-30625386
18.
A high throughput mutagenic analysis of yeast sumo structure and function.
PLoS Genet
; 13(2): e1006612, 2017 02.
Artigo
Inglês
| MEDLINE | ID: mdl-28166236
19.
Efficient flexible backbone protein-protein docking for challenging targets.
Bioinformatics
; 34(20): 3461-3469, 2018 10 15.
Artigo
Inglês
| MEDLINE | ID: mdl-29718115
20.
Accurate Structure Prediction of CDR H3 Loops Enabled by a Novel Structure-Based C-Terminal Constraint.
J Immunol
; 198(1): 505-515, 2017 01 01.
Artigo
Inglês
| MEDLINE | ID: mdl-27872211